IL_5V7Q_100

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_100 not in the Motif Atlas

Geometric match to IL_7EL1_001

Geometric discrepancy: 0.39

The information below is about IL_7EL1_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65498.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5V7Q|1|A|C|2759
5V7Q|1|A|U|2760
5V7Q|1|A|G|2761
*
5V7Q|1|A|C|2778
5V7Q|1|A|A|2779
5V7Q|1|A|A|2780
5V7Q|1|A|G|2781
5V7Q|1|A|G|2782

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L13