IL_5V7Q_101

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACG*CAGUU

Length

9 nucleotides

Bulged bases

5V7Q|1|A|A|2840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_101 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.265

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

5V7Q|1|A|A|2827
5V7Q|1|A|A|2828
5V7Q|1|A|C|2829
5V7Q|1|A|G|2830
*
5V7Q|1|A|C|2839
5V7Q|1|A|A|2840
5V7Q|1|A|G|2841
5V7Q|1|A|U|2842
5V7Q|1|A|U|2843

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2