IL_5V7Q_114
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCCC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_114 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.2087
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.12
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 12
Unit IDs
5V7Q|1|B|G|33
5V7Q|1|B|U|34
5V7Q|1|B|C|35
5V7Q|1|B|C|36
5V7Q|1|B|C|37
*
5V7Q|1|B|G|43
5V7Q|1|B|A|44
5V7Q|1|B|A|45
5V7Q|1|B|C|46
5V7Q|1|B|C|47
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
Coloring options: