IL_5V7Q_115
3D structure
- PDB id
- 5V7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V7Q_115 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.1637
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5V7Q|1|B|C|70
5V7Q|1|B|G|71
5V7Q|1|B|A|72
5V7Q|1|B|U|73
5V7Q|1|B|G|74
5V7Q|1|B|A|75
5V7Q|1|B|U|76
5V7Q|1|B|A|77
5V7Q|1|B|C|78
*
5V7Q|1|B|G|93
5V7Q|1|B|A|94
5V7Q|1|B|A|95
5V7Q|1|B|A|96
5V7Q|1|B|A|97
5V7Q|1|B|G|98
5V7Q|1|B|U|99
5V7Q|1|B|A|100
5V7Q|1|B|G|101
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
Coloring options: