IL_5V7Q_120

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_120 not in the Motif Atlas

Homologous match to IL_4WF9_024

Geometric discrepancy: 0.1988

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

5V7Q|1|A|U|832
5V7Q|1|A|G|833
5V7Q|1|A|A|834
5V7Q|1|A|A|835
5V7Q|1|A|G|836
*
5V7Q|1|A|U|853
5V7Q|1|A|G|854
5V7Q|1|A|G|855
5V7Q|1|A|A|856
5V7Q|1|A|G|857

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2