IL_5V7Q_138

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUG*CACCG

Length

8 nucleotides

Bulged bases

5V7Q|1|A|C|2950, 5V7Q|1|A|C|2951

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V7Q_138 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3104

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5V7Q|1|A|U|2933
5V7Q|1|A|U|2934
5V7Q|1|A|G|2935
*
5V7Q|1|A|C|2948
5V7Q|1|A|A|2949
5V7Q|1|A|C|2950
5V7Q|1|A|C|2951
5V7Q|1|A|G|2952

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19