IL_5V8I_010

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

5V8I|1|1A|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_010 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.0816

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5V8I|1|1A|C|280
5V8I|1|1A|G|281
5V8I|1|1A|A|282
5V8I|1|1A|A|283
5V8I|1|1A|U|284
*
5V8I|1|1A|A|357
5V8I|1|1A|U|358
5V8I|1|1A|A|359
5V8I|1|1A|G|360

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains