IL_5V8I_071

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_071 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0748

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5V8I|1|1A|U|1851
5V8I|1|1A|C|1852
5V8I|1|1A|A|1853
5V8I|1|1A|A|1854
5V8I|1|1A|G|1855
*
5V8I|1|1A|C|1887
5V8I|1|1A|G|1888
5V8I|1|1A|A|1889
5V8I|1|1A|A|1890
5V8I|1|1A|G|1891

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains