IL_5V8I_189

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5V8I|1|2A|G|801, 5V8I|1|2A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_189 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0581

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5V8I|1|2A|G|674
5V8I|1|2A|A|675
5V8I|1|2A|A|676
5V8I|1|2A|A|677
5V8I|1|2A|C|678
*
5V8I|1|2A|G|799
5V8I|1|2A|A|800
5V8I|1|2A|G|801
5V8I|1|2A|A|802
5V8I|1|2A|U|803
5V8I|1|2A|A|804
5V8I|1|2A|G|805
5V8I|1|2A|C|806

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15