IL_5V8I_227
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CUAG*CGAAG
- Length
- 9 nucleotides
- Bulged bases
- 5V8I|1|2A|A|1554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V8I_227 not in the Motif Atlas
- Homologous match to IL_7RQB_057
- Geometric discrepancy: 0.0792
- The information below is about IL_7RQB_057
- Detailed Annotation
- tSH-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_04059.1
- Basepair signature
- cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
5V8I|1|2A|C|1437
5V8I|1|2A|U|1438
5V8I|1|2A|A|1439
5V8I|1|2A|G|1440
*
5V8I|1|2A|C|1551
5V8I|1|2A|G|1552
5V8I|1|2A|A|1553
5V8I|1|2A|A|1554
5V8I|1|2A|G|1555
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: