IL_5V8I_255

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5V8I|1|2A|G|2116

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_255 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.3487

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5V8I|1|2A|G|2110
5V8I|1|2A|C|2111
5V8I|1|2A|G|2112
5V8I|1|2A|U|2113
5V8I|1|2A|A|2114
5V8I|1|2A|G|2115
5V8I|1|2A|G|2116
5V8I|1|2A|A|2117
5V8I|1|2A|U|2118
5V8I|1|2A|A|2119
5V8I|1|2A|G|2120
*
5V8I|1|2A|C|2178
5V8I|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains