IL_5V8I_294

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

5V8I|1|2a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_294 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0996

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

5V8I|1|2a|G|148
5V8I|1|2a|A|149
5V8I|1|2a|C|150
5V8I|1|2a|A|151
5V8I|1|2a|A|152
5V8I|1|2a|C|153
*
5V8I|1|2a|G|168
5V8I|1|2a|C|169
5V8I|1|2a|U|170
5V8I|1|2a|A|171
5V8I|1|2a|A|172
5V8I|1|2a|U|173
5V8I|1|2a|C|174

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2t

30S ribosomal protein S20