IL_5V8I_319

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V8I_319 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.07

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5V8I|1|2a|G|887
5V8I|1|2a|G|888
5V8I|1|2a|A|889
5V8I|1|2a|G|890
5V8I|1|2a|U|891
5V8I|1|2a|A|892
5V8I|1|2a|C|893
5V8I|1|2a|G|894
*
5V8I|1|2a|U|905
5V8I|1|2a|G|906
5V8I|1|2a|A|907
5V8I|1|2a|A|908
5V8I|1|2a|A|909
5V8I|1|2a|C|910

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12