IL_5V8I_346
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 5V8I|1|1A|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V8I_346 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.0883
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5V8I|1|1A|C|844
5V8I|1|1A|G|845
5V8I|1|1A|C|846
5V8I|1|1A|U|847
5V8I|1|1A|G|848
5V8I|1|1A|A|849
5V8I|1|1A|C|850
*
5V8I|1|1A|G|927
5V8I|1|1A|G|928
5V8I|1|1A|U|930
5V8I|1|1A|G|931
5V8I|1|1A|G|932
5V8I|1|1A|A|933
5V8I|1|1A|G|934
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
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