IL_5V93_036
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGGAAAG*CGAUAAUGUAGCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5V93|1|A|U|1256, 5V93|1|A|U|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_036 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1834
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5V93|1|A|G|1153
5V93|1|A|G|1154
5V93|1|A|G|1155
5V93|1|A|A|1156
5V93|1|A|A|1157
5V93|1|A|A|1158
5V93|1|A|G|1159
*
5V93|1|A|C|1253
5V93|1|A|G|1254
5V93|1|A|A|1255
5V93|1|A|U|1256
5V93|1|A|A|1257
5V93|1|A|A|1258
5V93|1|A|U|1259
5V93|1|A|G|1260
5V93|1|A|U|1261
5V93|1|A|A|1262
5V93|1|A|G|1263
5V93|1|A|C|1264
5V93|1|A|G|1265
5V93|1|A|G|1266
5V93|1|A|G|1267
5V93|1|A|G|1268
5V93|1|A|C|1269
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
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