IL_5V93_039

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5V93|1|A|A|1217

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_039 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3855

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5V93|1|A|G|1216
5V93|1|A|A|1217
5V93|1|A|G|1218
5V93|1|A|U|1219
5V93|1|A|G|1220
*
5V93|1|A|C|1229
5V93|1|A|U|1230
5V93|1|A|C|1231

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6