IL_5V93_043

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUAAG*CGAUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_043 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2577

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5V93|1|A|C|1481
5V93|1|A|C|1482
5V93|1|A|U|1483
5V93|1|A|A|1484
5V93|1|A|A|1485
5V93|1|A|G|1486
*
5V93|1|A|C|1507
5V93|1|A|G|1508
5V93|1|A|A|1509
5V93|1|A|U|1510
5V93|1|A|G|1511
5V93|1|A|G|1512

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2