IL_5V93_044

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_044 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.279

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5V93|1|A|C|1488
5V93|1|A|G|1489
5V93|1|A|A|1490
5V93|1|A|G|1491
5V93|1|A|G|1492
*
5V93|1|A|C|1501
5V93|1|A|G|1502
5V93|1|A|U|1503
5V93|1|A|A|1504
5V93|1|A|G|1505

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28