IL_5V93_050

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUCGAU*GAGUU

Length

11 nucleotides

Bulged bases

5V93|1|A|A|1591

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_050 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3918

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5V93|1|A|A|1587
5V93|1|A|U|1588
5V93|1|A|C|1589
5V93|1|A|G|1590
5V93|1|A|A|1591
5V93|1|A|U|1592
*
5V93|1|A|G|1613
5V93|1|A|A|1614
5V93|1|A|G|1615
5V93|1|A|U|1616
5V93|1|A|U|1617

Current chains

Chain A

23S rRNA

Nearby chains