IL_5V93_052

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*CUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_052 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.59

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5V93|1|A|C|1655
5V93|1|A|G|1656
5V93|1|A|A|1657
5V93|1|A|A|1658
5V93|1|A|G|1659
*
5V93|1|A|C|1814
5V93|1|A|U|1815
5V93|1|A|A|1816
5V93|1|A|G|1817

Current chains

Chain A

23S rRNA

Nearby chains