IL_5V93_068

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_068 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.2351

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|A|U|2085
5V93|1|A|U|2086
5V93|1|A|A|2087
5V93|1|A|A|2088
5V93|1|A|G|2089
*
5V93|1|A|U|2125
5V93|1|A|U|2126
5V93|1|A|A|2127
5V93|1|A|A|2128
5V93|1|A|G|2129

Current chains

Chain A

23S rRNA

Nearby chains