IL_5V93_075

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGACC*GGUACCC

Length

12 nucleotides

Bulged bases

5V93|1|A|A|2677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_075 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3629

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5V93|1|A|G|2306
5V93|1|A|G|2307
5V93|1|A|A|2308
5V93|1|A|C|2309
5V93|1|A|C|2310
*
5V93|1|A|G|2674
5V93|1|A|G|2675
5V93|1|A|U|2676
5V93|1|A|A|2677
5V93|1|A|C|2678
5V93|1|A|C|2679
5V93|1|A|C|2680

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain E

50S ribosomal protein L4