IL_5V93_093

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_093 not in the Motif Atlas

Homologous match to IL_5J7L_346

Geometric discrepancy: 0.1687

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5V93|1|A|C|2890
5V93|1|A|U|2891
5V93|1|A|A|2892
5V93|1|A|G|2893
5V93|1|A|U|2894
5V93|1|A|A|2895
5V93|1|A|C|2896
*
5V93|1|A|G|2901
5V93|1|A|G|2902
5V93|1|A|A|2903
5V93|1|A|C|2904
5V93|1|A|C|2905
5V93|1|A|G|2906

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6