IL_5V93_096

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAC*GAUAG

Length

10 nucleotides

Bulged bases

5V93|1|A|C|2927, 5V93|1|A|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_096 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.2721

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

5V93|1|A|U|2925
5V93|1|A|G|2926
5V93|1|A|C|2927
5V93|1|A|A|2928
5V93|1|A|C|2929
*
5V93|1|A|G|2956
5V93|1|A|A|2957
5V93|1|A|U|2958
5V93|1|A|A|2959
5V93|1|A|G|2960

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19