IL_5V93_098

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_098 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1725

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5V93|1|A|G|2975
5V93|1|A|A|2976
5V93|1|A|U|2977
5V93|1|A|A|2978
5V93|1|A|A|2979
5V93|1|A|C|2980
*
5V93|1|A|G|3000
5V93|1|A|G|3001
5V93|1|A|A|3002
5V93|1|A|A|3003
5V93|1|A|A|3004
5V93|1|A|C|3005

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13