IL_5V93_116

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

5V93|1|a|U|169

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_116 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1889

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|a|G|143
5V93|1|a|G|144
5V93|1|a|A|145
5V93|1|a|U|146
5V93|1|a|A|147
5V93|1|a|A|148
5V93|1|a|G|149
*
5V93|1|a|U|164
5V93|1|a|C|165
5V93|1|a|U|166
5V93|1|a|A|167
5V93|1|a|A|168
5V93|1|a|U|169
5V93|1|a|A|170
5V93|1|a|C|171

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20