IL_5V93_129
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_129 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.2001
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
5V93|1|a|C|560
5V93|1|a|G|561
5V93|1|a|U|562
5V93|1|a|A|563
5V93|1|a|A|564
5V93|1|a|A|565
5V93|1|a|G|566
*
5V93|1|a|C|873
5V93|1|a|G|874
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: