IL_5V93_152

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCAU*AUGC

Length

10 nucleotides

Bulged bases

5V93|1|a|C|1045

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_152 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.269

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5V93|1|a|G|1042
5V93|1|a|U|1043
5V93|1|a|G|1044
5V93|1|a|C|1045
5V93|1|a|A|1046
5V93|1|a|U|1047
*
5V93|1|a|A|1196
5V93|1|a|U|1197
5V93|1|a|G|1198
5V93|1|a|C|1199

Current chains

Chain a

16S rRNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z