IL_5V93_162

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_162 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.2265

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5V93|1|a|C|1295
5V93|1|a|G|1296
5V93|1|a|G|1297
5V93|1|a|A|1298
5V93|1|a|U|1299
5V93|1|a|C|1300
*
5V93|1|a|G|1321
5V93|1|a|U|1322
5V93|1|a|G|1323
5V93|1|a|A|1324
5V93|1|a|A|1325
5V93|1|a|G|1326

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain m

30S ribosomal protein S13