IL_5V93_163

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5V93|1|a|C|1393, 5V93|1|a|A|1496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_163 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.2284

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5V93|1|a|C|1392
5V93|1|a|C|1393
5V93|1|a|G|1394
*
5V93|1|a|C|1494
5V93|1|a|A|1495
5V93|1|a|A|1496
5V93|1|a|G|1497

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain k

30S ribosomal protein S11

Chain x

Mitochondrial domain of uncharacterised function (DUF1713)