IL_5V93_186

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5V93|1|A|U|1162

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_186 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.3533

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5V93|1|A|G|1160
5V93|1|A|A|1161
5V93|1|A|U|1162
5V93|1|A|G|1163
*
5V93|1|A|C|1250
5V93|1|A|G|1251
5V93|1|A|C|1252

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain M

50S ribosomal protein L16