IL_5V93_188

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCAGCGAAG*UGGAGG

Length

15 nucleotides

Bulged bases

5V93|1|A|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_188 not in the Motif Atlas

Geometric match to IL_6HCT_001

Geometric discrepancy: 0.2794

The information below is about IL_6HCT_001

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_74205.1

Basepair signature

cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

Number of instances in this motif group

3

Unit IDs

5V93|1|A|U|1338
5V93|1|A|C|1339
5V93|1|A|A|1340
5V93|1|A|G|1341
5V93|1|A|C|1342
5V93|1|A|G|1343
5V93|1|A|A|1344
5V93|1|A|A|1345
5V93|1|A|G|1346
*
5V93|1|A|U|1365
5V93|1|A|G|1366
5V93|1|A|G|1367
5V93|1|A|A|1368
5V93|1|A|G|1369
5V93|1|A|G|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20