IL_5V93_190

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAG*UGAUCC

Length

11 nucleotides

Bulged bases

5V93|1|A|U|1791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_190 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3702

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5V93|1|A|G|1674
5V93|1|A|G|1675
5V93|1|A|U|1676
5V93|1|A|A|1677
5V93|1|A|G|1678
*
5V93|1|A|U|1788
5V93|1|A|G|1789
5V93|1|A|A|1790
5V93|1|A|U|1791
5V93|1|A|C|1792
5V93|1|A|C|1793

Current chains

Chain A

23S rRNA

Nearby chains