IL_5V93_191

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAG*UGACG

Length

9 nucleotides

Bulged bases

5V93|1|A|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_191 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.3565

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5V93|1|A|C|1706
5V93|1|A|A|1707
5V93|1|A|A|1708
5V93|1|A|G|1709
*
5V93|1|A|U|1759
5V93|1|A|G|1760
5V93|1|A|A|1761
5V93|1|A|C|1762
5V93|1|A|G|1763

Current chains

Chain A

23S rRNA

Nearby chains