IL_5V93_209

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CACAAUG*UGAUG

Length

12 nucleotides

Bulged bases

5V93|1|a|G|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5V93_209 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3685

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.1

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

5

Unit IDs

5V93|1|a|C|369
5V93|1|a|A|370
5V93|1|a|C|371
5V93|1|a|A|372
5V93|1|a|A|373
5V93|1|a|U|374
5V93|1|a|G|375
*
5V93|1|a|U|386
5V93|1|a|G|387
5V93|1|a|A|388
5V93|1|a|U|389
5V93|1|a|G|390

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16