IL_5V93_211
3D structure
- PDB id
- 5V93 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GGAGUACGG*CUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5V93_211 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.197
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5V93|1|a|G|880
5V93|1|a|G|881
5V93|1|a|A|882
5V93|1|a|G|883
5V93|1|a|U|884
5V93|1|a|A|885
5V93|1|a|C|886
5V93|1|a|G|887
5V93|1|a|G|888
*
5V93|1|a|C|897
5V93|1|a|U|898
5V93|1|a|A|899
5V93|1|a|A|900
5V93|1|a|A|901
5V93|1|a|A|902
5V93|1|a|C|903
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: