IL_5VP2_006
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_006 not in the Motif Atlas
- Homologous match to IL_9DFE_006
- Geometric discrepancy: 0.0545
- The information below is about IL_9DFE_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5VP2|1|1A|G|177
5VP2|1|1A|G|178
5VP2|1|1A|A|179
5VP2|1|1A|A|180
5VP2|1|1A|C|181
5VP2|1|1A|U|182
5VP2|1|1A|G|183
*
5VP2|1|1A|C|190
5VP2|1|1A|U|191
5VP2|1|1A|C|192
5VP2|1|1A|A|193
5VP2|1|1A|G|194
5VP2|1|1A|U|195
5VP2|1|1A|A|196
5VP2|1|1A|C|197
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 17
- 50S ribosomal protein L34
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
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