IL_5VP2_039
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5VP2|1|1A|U|1072, 5VP2|1|1A|A|1173, 5VP2|1|1A|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_039 not in the Motif Atlas
- Homologous match to IL_9DFE_039
- Geometric discrepancy: 0.0704
- The information below is about IL_9DFE_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5VP2|1|1A|G|1070
5VP2|1|1A|G|1071
5VP2|1|1A|U|1072
5VP2|1|1A|A|1073
5VP2|1|1A|A|1074
5VP2|1|1A|A|1075
5VP2|1|1A|G|1076
*
5VP2|1|1A|C|1170
5VP2|1|1A|G|1171
5VP2|1|1A|A|1172
5VP2|1|1A|A|1173
5VP2|1|1A|A|1174
5VP2|1|1A|A|1175
5VP2|1|1A|U|1176
5VP2|1|1A|G|1177
5VP2|1|1A|A|1178
5VP2|1|1A|U|1179
5VP2|1|1A|C|1180
5VP2|1|1A|G|1181
5VP2|1|1A|G|1182
5VP2|1|1A|G|1183
5VP2|1|1A|G|1184
5VP2|1|1A|C|1185
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1E
- 50S ribosomal protein L3
- Chain 1N
- 50S ribosomal protein L13
- Chain 1Q
- 50S ribosomal protein L16
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