IL_5VP2_054

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAG*CAGG

Length

7 nucleotides

Bulged bases

5VP2|1|1A|G|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_054 not in the Motif Atlas

Homologous match to IL_9DFE_055

Geometric discrepancy: 0.0834

The information below is about IL_9DFE_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31990.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

2

Unit IDs

5VP2|1|1A|U|1479
5VP2|1|1A|A|1480
5VP2|1|1A|G|1481
*
5VP2|1|1A|C|1604
5VP2|1|1A|A|1605
5VP2|1|1A|G|1606
5VP2|1|1A|G|1607

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains