IL_5VP2_093
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5VP2_093 not in the Motif Atlas
- Homologous match to IL_9DFE_095
- Geometric discrepancy: 0.0703
- The information below is about IL_9DFE_095
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5VP2|1|1A|C|2478
5VP2|1|1A|C|2479
5VP2|1|1A|G|2480
5VP2|1|1A|A|2481
5VP2|1|1A|G|2482
*
5VP2|1|1A|C|2492
5VP2|1|1A|G|2493
5VP2|1|1A|G|2494
5VP2|1|1A|C|2495
5VP2|1|1A|G|2496
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1w
- Transfer RNA; tRNA
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