IL_5VP2_098

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAA*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_098 not in the Motif Atlas

Geometric match to IL_7ECK_013

Geometric discrepancy: 0.1552

The information below is about IL_7ECK_013

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5VP2|1|1A|G|2600
5VP2|1|1A|A|2601
5VP2|1|1A|A|2602
*
5VP2|1|1A|U|2616
5VP2|1|1A|PSU|2617
5VP2|1|1A|C|2618

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2