IL_5VP2_153

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5VP2|1|1a|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_153 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1229

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5VP2|1|1a|G|1048
5VP2|1|1a|U|1049
5VP2|1|1a|G|1050
*
5VP2|1|1a|C|1208
5VP2|1|1a|C|1209

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z