IL_5VP2_183

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

5VP2|1|2A|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|2A|C|272|||J
5VP2|1|2A|G|274
5VP2|1|2A|G|275
5VP2|1|2A|A|276
5VP2|1|2A|C|277
5VP2|1|2A|A|278
5VP2|1|2A|C|279
*
5VP2|1|2A|G|361
5VP2|1|2A|U|362
5VP2|1|2A|G|363

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains