IL_5VP2_222

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5VP2|1|2A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_222 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1728

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5VP2|1|2A|C|1417
5VP2|1|2A|G|1418
5VP2|1|2A|A|1419
5VP2|1|2A|U|1420
5VP2|1|2A|G|1421
*
5VP2|1|2A|C|1577
5VP2|1|2A|U|1578
5VP2|1|2A|A|1579
5VP2|1|2A|A|1580
5VP2|1|2A|G|1581

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains