IL_5VP2_253

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGC*GCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VP2|1|2A|G|2124
5VP2|1|2A|G|2125
5VP2|1|2A|A|2126
5VP2|1|2A|G|2127
5VP2|1|2A|C|2128
*
5VP2|1|2A|G|2160
5VP2|1|2A|C|2161
5VP2|1|2A|G|2162
5VP2|1|2A|C|2163
5VP2|1|2A|C|2164
5VP2|1|2A|G|2165
5VP2|1|2A|G|2166
5VP2|1|2A|U|2167
5VP2|1|2A|G|2168
5VP2|1|2A|A|2169
5VP2|1|2A|A|2170
5VP2|1|2A|A|2171
5VP2|1|2A|U|2172
5VP2|1|2A|A|2173
5VP2|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA