IL_5VP2_348

3D structure

PDB id

5VP2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAGUU*AAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VP2_348 not in the Motif Atlas

Homologous match to IL_6CZR_124

Geometric discrepancy: 0.1683

The information below is about IL_6CZR_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38684.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5VP2|1|1a|U|249
5VP2|1|1a|A|250
5VP2|1|1a|G|251
5VP2|1|1a|U|252
5VP2|1|1a|U|253
*
5VP2|1|1a|A|273
5VP2|1|1a|A|274
5VP2|1|1a|G|275

Current chains

Chain 1a

16S ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17