IL_5VPO_011

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

5VPO|1|QA|U|244, 5VPO|1|QA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0665

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5VPO|1|QA|C|242
5VPO|1|QA|A|243
5VPO|1|QA|U|244
5VPO|1|QA|C|245
5VPO|1|QA|A|246
5VPO|1|QA|G|247
*
5VPO|1|QA|C|277
5VPO|1|QA|G|278
5VPO|1|QA|A|279
5VPO|1|QA|C|280
5VPO|1|QA|G|281
5VPO|1|QA|A|282
5VPO|1|QA|C|283
5VPO|1|QA|G|284

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17