IL_5VPO_019

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.1192

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5VPO|1|QA|G|450
5VPO|1|QA|A|451
5VPO|1|QA|A|452
5VPO|1|QA|A|453
5VPO|1|QA|C|454
5VPO|1|QA|C|455
*
5VPO|1|QA|G|477
5VPO|1|QA|A|478
5VPO|1|QA|C|479
5VPO|1|QA|U|480
5VPO|1|QA|G|481
5VPO|1|QA|A|482
5VPO|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16