3D structure

PDB id
5VPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site ASL SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.34 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5VPO_030 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.0679
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5VPO|1|QA|G|673
5VPO|1|QA|G|674
5VPO|1|QA|A|675
5VPO|1|QA|A|676
5VPO|1|QA|U|677
5VPO|1|QA|U|678
*
5VPO|1|QA|A|712
5VPO|1|QA|G|713
5VPO|1|QA|G|714
5VPO|1|QA|A|715
5VPO|1|QA|A|716
5VPO|1|QA|C|717

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QF
30S ribosomal protein S6
Chain QK
30S ribosomal protein S11
Chain QR
30S ribosomal protein S18
Chain RD
50S ribosomal protein L2

Coloring options:


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