IL_5VPO_034

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5VPO_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0699

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5VPO|1|QA|G|887
5VPO|1|QA|G|888
5VPO|1|QA|A|889
5VPO|1|QA|G|890
5VPO|1|QA|U|891
5VPO|1|QA|A|892
5VPO|1|QA|C|893
5VPO|1|QA|G|894
*
5VPO|1|QA|U|905
5VPO|1|QA|G|906
5VPO|1|QA|A|907
5VPO|1|QA|A|908
5VPO|1|QA|A|909
5VPO|1|QA|C|910

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QQ

30S ribosomal protein S17